Oryza Sativa (Rice) Home
Summary
Germplasm:
Germplasm: 128363
WGS Germplasm: 5136
WGS Sample: 5542
Phenotype:
Traits: 180
Values: 4495566
Genotype:
Locus: 109121
Locus Genotype: 2390569
Nip SNP: 14850931
Nip InDel: 2250804
R498 SNP: 13278107
R498 InDel: 2387538
KnownGene:
Named Gene: 13530
Described Trait: 4710
Verified Alleles: 80
Population Sample:
Rice3k: 3030
MBK: 1161
HB950: 950
Japan174: 174
Reference Genome:
Japonica Nipponbare (Nip)
Indica ShuHui498 (R498)
RNA-Seq Datasets:
Tissue: 20
Stage: 45
Datasets: 175
News
April 20,2018 Top
MBKbase v1.0 Online:
Molecular Breeding Knowledgebase (MBKbase) is a part of the Strategic Priority Research Program of CAS (class A) for "Molecular Module-based Designer Breeding Systems".
This is a integrated database which collected population next-generation sequencing, germplasm resources, phenotypic and various genomics data.
Our website provide both Locus Genotying and Custom Genotyping,the genotype and phenotype can be associated displayed.
Dec. 14,2018
SNP/InDel Update:
The SNP/InDel of R498-reference have been loaded database, the genome annotation of R498 and Nip have been updated to V3, and all unified loci genotyping data also been updated.
Nov. 28,2018
Add More Function:
In tools menu, G2G-Map( and sequence download), query genotype by sequence are available; In CustomGT page, the genotyping of multi-loci combination query have been developed.
June 01,2018
Add Submit Function:
In tools menu, Submit is available, You can submit a VCF sample and will generate an online report in real-time.
May 02,2018
Add Search by Genotype:
In germplasm home page, a new function of germplasm search by genotype was be added, which provides three custom filtering method: Position GT, Locus GT and Verified GT. You can set the complex logic query options.