Tu_IGDB Summary
Statistics of the functionally annotated genes in Tu
Type | Tu |
Gene number | 41,507 |
Gene length | 2,329/3,360 |
Transcript length | 1,261/1,453 |
Max cds length | 16,086 |
CDS length | 765/998 |
Protein length | 254/332 |
Exon length | 173/320 |
Intron length | 142/508 |
5' UTR length | 116/212 |
3' UTR length | 257/320 |
Exon number | 3.0/4.5 |
Intron number | 1.0/1.5 |
* Each number indicates the median/average
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Tu Genome sequenceTu Gene Anotation
Tu TE Anotation(GFF)
Tu TRF Anotation(GFF)
Tu noncodingRNA(GFF)
Tu lncRNA(GFF)
Updates
Introduction to Tu Genome Project
We predicted 41,507 high confidence protein coding genes in Tu through an evidence-based gene prediction pipeline by combining known proteins, experimentally cloned cDNAs/ESTs and assembled transcripts from rice RNA-seq data.
Basic genome statistics of Tu
Chrome | Length | Gene# |
Tu1 | 583,994,449 | 4,885 |
Tu2 | 753,818,500 | 6,396 |
Tu3 | 747,043,632 | 5,931 |
Tu4 | 619,528,116 | 4,036 |
Tu5 | 662,474,153 | 5,720 |
Tu6 | 576,970,508 | 4,467 |
Tu7 | 719,848,703 | 6,141 |
Total | 4,665,678,060 | 37,576 |
Cite
- Hong-Qing Ling, Bin Ma, Xiaoli Shi, Hui Liu, Lingli Dong, Hua Sun, Yinghao Cao, Qiang Gao, Shusong Zheng, Ye Li, Ying Yu, Huilong Du, Ming Qi, Yan Li, Hongwei Lu, Hua Yu, Yan Cui, Ning Wang, Chunlin Chen, Huilan Wu, Yan Zhao, Juncheng Zhang, Yiwen Li, Wenjuan Zhou, Bairu Zhang, Weijuan Hu, Michiel J. T. van Eijk, Jifeng Tang, Hanneke M. A. Witsenboer, Shancen Zhao, Zhensheng Li, Aimin Zhang, Daowen Wang and Chengzhi Liang. Genome sequence of the progenitor of wheat A subgenome Triticum urartu. Nature.doi:10.1038/s41586-018-0108-0 .