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Custom Genotyping and Comment (Rice)^FireFox

Search By:

Locus ID:

+ : - : [k]

Reference: Annotation: Chr:

Reference:

Region/Postion:

For Example: Chr4:30311519..30316303, Chr4:30315214

Chr: Start: End:

Gene Symbol:

Or

Select By Class: SubClass: Trait:

Reference:	Chr:	Start:
		End:

=>

Selected:

Locus List:

Locus ID	Symbol	Reference	Region	Length	Source	Source ID	Source Locus Note

Source ID Lists:

Start	Source ID	Region	Strand	Length	Source Locus Note

KnownGene Lists:

Symbols	Locus ID	Source ID	Trait	Name

Population Select:

By Project:

Ecotype:

Sample: Mapped % >= Coverage % >= Depth >=

By Phenotype:

By SNP-Tree:

Summary:

Select Sample by Phenotype:

X

Select Sample From SNP-Tree: By Click Sub-Tree Node

Project: SubTree Sample >=

Region Structure:

Track:

Domain

miRNA

TE

Promoter

↓

↓

↓

REF +
-
AA

Region Genotype:

X

X

X

Sample Num:

>=

ALT Filter:

ALT % >=

Missing % <=

ALT Population:BigSmall Cluster Filtered:SNP InDel ALT Depth >= && Quality >=

ALT Type:

SNP InDel

Gene Structure:

Exon Intron

Upstream Downstream

Custom Position:

Similarity % >=

Genotype Component:

Select Group:

Phenotype Box Plot:

Select Phenotype:

RNA-seq Expression:

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