MBKbase, KnownGene

Rice KnownGene Search and Summary

Gene Symbol:			Gene Trait:		Browse	Gene Name:
For example: NH2 or OsNH2			For example: drought tolerance, abscisic acid			For example: f-box protein, sucrose phosphate synthase

KnownGene:
A known gene is defined as a gene that has a symbol and a name or function description, and the symbol must come from certain references.
has a certain reference

Three levels of KnownGene:

Named Gene, the gene that has a symbol or name description
Trait Described Gene, the gene that has a function description and correlate with specific phenotypic trait
Verified Alleles, the gene that has a different function description associated with different alleles

Named Genes:

Genes With Trait Described:

Data Sources	Gene Number	Updated
Q-TARO	1032	2012/09/24
Genebank	3720	2019/05/08
funRiceGenes	2232	2019/05/07
Oryzabase	11270	2019/05/07
Total (non redundant)	13219	2019/05/08

The Rice Named Genes are collected from published sources, including Oryzabase, Genbank, Q-TARO and funRiceGenes Database.
In order to be associated with functionally characterized phenotypic traits, these related genes are divided into seven groups under different types of traits or germplasm information. The trait information is extractedbased on functional description and trait-related keywords, and manually checked. More information can be found in the Rice KnownGene Class List.

Class	SubClass Num.	Related Traits	Related Genes
Biotic_stress	6	10	1261
Growth_Dev	5	54	1311
Morphological	14	70	2390
Agronomical	8	43	1251
Abiotic_stress	11	21	2747
Biochemical	6	48	1295
Quality	5	10	326
Total (non redundant)			4821